#pragma once

#include <vector>
#include <opencv2/opencv.hpp> // all opencv header
#include <cmath>
#include "hdrplus/burst.h"

#define TILE_SIZE 16

namespace hdrplus
{

class merge
{
    public:
        int offset = TILE_SIZE / 2;
        float baseline_lambda_shot = 3.24 * pow( 10, -4 );
        float baseline_lambda_read = 4.3 * pow( 10, -6 );

        merge() = default;
        ~merge() = default;

        /**
         * @brief Run alignment on burst of images
         * 
         * @param burst_images collection of burst images
         * @param alignments alignment in pixel value pair. 
         *      Outer most vector is per alternative image.
         *      Inner most two vector is for horizontal & vertical tiles 
         */
        void process( hdrplus::burst& burst_images, \
                      std::vector<std::vector<std::vector<std::pair<int, int>>>>& alignments);


        /*
        std::vector<cv::Mat> get_other_tiles(); //return the other tile list T_1 to T_n

        std::vector<cv::Mat> vector_math(string operation, reference_tile, other_tile_list); //for loop allowing operations across single element and list

        std::vector<cv::Mat> scalar_vector_math(string operation, scalar num, std::vector<cv::Mat> tile_list); //for loop allowing operations across single element and list

        std::vector<cv::Mat> average_vector(std::vector<cv::Mat> tile_list); //take average of vector elements

        */

    private:
        float tileRMS(cv::Mat tile) {
            cv::Mat squared;
            cv::multiply(tile, tile, squared);
            return sqrt(cv::mean(squared)[0]);
        }

        std::vector<float> getNoiseVariance(std::vector<cv::Mat> tiles, float lambda_shot, float lambda_read) {
            std::vector<float> noise_variance;
            for (auto tile : tiles) {
                noise_variance.push_back(lambda_shot * tileRMS(tile) + lambda_read);
            }
            return noise_variance;
        }
    
        cv::Mat cosineWindow1D(cv::Mat input, int window_size = TILE_SIZE) {
            cv::Mat output = input.clone();
            for (int i = 0; i < input.cols; ++i) {
                output.at<float>(0, i) = 1. / 2. - 1. / 2. * cos(2 * M_PI * (input.at<float>(0, i) + 1 / 2.) / window_size);
            }
            return output;
        }

        cv::Mat cosineWindow2D(cv::Mat tile) {
            int window_size = tile.rows; // Assuming square tile
            cv::Mat output_tile = tile.clone();

            cv::Mat window = cv::Mat::zeros(1, window_size, CV_32F);
            for(int i = 0; i < window_size; ++i) {
                window.at<float>(i) = i;
            }

            cv::Mat window_x = cosineWindow1D(window, window_size);
            window_x = cv::repeat(window_x, window_size, 1);
            cv::Mat window_2d = window_x.mul(window_x.t());

            cv::Mat window_applied;
            cv::multiply(tile, window_2d, window_applied, 1, CV_32F);
            return window_applied;
        }

        cv::Mat cat2Dtiles(std::vector<std::vector<cv::Mat>> tiles) {
            std::vector<cv::Mat> rows;
            for (auto row_tiles : tiles) {
                cv::Mat row;
                cv::hconcat(row_tiles, row);
                rows.push_back(row);
            }
            cv::Mat img;
            cv::vconcat(rows, img);
            return img;
        }

        void circshift(cv::Mat &out, const cv::Point &delta)
        {
            cv::Size sz = out.size();

            // error checking
            assert(sz.height > 0 && sz.width > 0);

            // no need to shift
            if ((sz.height == 1 && sz.width == 1) || (delta.x == 0 && delta.y == 0))
                return;

            // delta transform
            int x = delta.x;
            int y = delta.y;
            if (x > 0) x = x % sz.width;
            if (y > 0) y = y % sz.height;
            if (x < 0) x = x % sz.width + sz.width;
            if (y < 0) y = y % sz.height + sz.height;


            // in case of multiple dimensions
            std::vector<cv::Mat> planes;
            split(out, planes);

            for (size_t i = 0; i < planes.size(); i++)
            {
                // vertical
                cv::Mat tmp0, tmp1, tmp2, tmp3;
                cv::Mat q0(planes[i], cv::Rect(0, 0, sz.width, sz.height - y));
                cv::Mat q1(planes[i], cv::Rect(0, sz.height - y, sz.width, y));
                q0.copyTo(tmp0);
                q1.copyTo(tmp1);
                tmp0.copyTo(planes[i](cv::Rect(0, y, sz.width, sz.height - y)));
                tmp1.copyTo(planes[i](cv::Rect(0, 0, sz.width, y)));

                // horizontal
                cv::Mat q2(planes[i], cv::Rect(0, 0, sz.width - x, sz.height));
                cv::Mat q3(planes[i], cv::Rect(sz.width - x, 0, x, sz.height));
                q2.copyTo(tmp2);
                q3.copyTo(tmp3);
                tmp2.copyTo(planes[i](cv::Rect(x, 0, sz.width - x, sz.height)));
                tmp3.copyTo(planes[i](cv::Rect(0, 0, x, sz.height)));
            }

            cv::merge(planes, out);
        }

        void fftshift(cv::Mat &out)
        {
            cv::Size sz = out.size();
            cv::Point pt(0, 0);
            pt.x = (int) floor(sz.width / 2.0);
            pt.y = (int) floor(sz.height / 2.0);
            circshift(out, pt);
        }

        void ifftshift(cv::Mat &out)
        {
            cv::Size sz = out.size();
            cv::Point pt(0, 0);
            pt.x = (int) ceil(sz.width / 2.0);
            pt.y = (int) ceil(sz.height / 2.0);
            circshift(out, pt);
        }

        std::vector<cv::Mat> getReferenceTiles(cv::Mat reference_image);

        cv::Mat mergeTiles(std::vector<cv::Mat> tiles, int rows, int cols);

        cv::Mat processChannel( hdrplus::burst& burst_images, \
                      std::vector<std::vector<std::vector<std::pair<int, int>>>>& alignments, \
                      cv::Mat channel_image, \
                      std::vector<cv::Mat> alternate_channel_i_list,\
                      float lambda_shot, \
                      float lambda_read);

        //temporal denoise
        std::vector<cv::Mat> temporal_denoise(std::vector<cv::Mat> reference_tiles, std::vector<cv::Mat> reference_tiles_DFT, std::vector<float> noise_varaince);
        std::vector<cv::Mat> spatial_denoise(std::vector<cv::Mat> tiles, int num_alts, std::vector<float> noise_variance, float spatial_factor);


};

} // namespace hdrplus